7:30
Registration and Coffee
8:15
Chairperson's Remarks
Paul Watt, Ph.D., Chief Scientific Officer, Phylogica Ltd, Australia
Non-Antibody-Derived Scaffolds: Emerging Preclinical and Clinical Results
8:30
Anticalins, A Novel Class of Binding Proteins and Their Use as Therapeutics
Anticalins, which are derived from human lipocalins, are small 20kDa proteins with highly selective binding properties. The use of Anticalins has already been validated in vivo for e.g. oncology, ophthalmology and molecular imaging and the first clinical candidate PRS-050 (VEGF antagonist) will enter the clinic soon. Unique features such as hapten binding, dual targeting and pulmonary delivery will be presented along with data regarding the compact structure, intrinsic stability and broad formulation flexibility of Anticalins.
Kristian Jensen, Ph.D., Chief Operating Officer, Pieris AG, Germany
9:00
Centyrin Alternative Scaffolds: A New Biotherapeutic Platform for J&J
While monoclonal antibodies have demonstrated good utility as therapeutics, they have some drawbacks related to their inherent complexity. Alternative scaffolds represent an emerging class of protein drugs that may combine the attractive specificity properties of mAbs with the simplicity, ease of manufacture and tissue penetration associated with small molecules. We aim to exploit the properties of alternative scaffolds to develop a series of protein platforms tailored towards the therapeutic application.
Karyn T. O'Neil, Ph.D., Chief Scientific Officer, Centyrex, Johnson & Johnson Ventures
9:30
Powerful and Fast: DARPin Therapeutics
DARPins are a novel class of high-affinity, low-immunogenicity protein drugs that combine the advantages of antibodies and small molecule drugs. The favorable properties of DARPins enable the fast generation and production of a variety of drug candidates for different indications. We have validated several DARPin drug candidates in a variety of disease models. DARPins can be tailored to the format of choice allowing the generation of ideal drugs. A best-in-class therapeutic program illustrating the potency of the DARPin therapeutic platform will be presented.
H. Kaspar Binz, Ph.D., Vice President, Technology and Co-Founder, Molecular Partners, Switzerland
10:00
Ecallantide: Discovery and Development of an Engineered Human Protease Inhibitor Scaffold
Dyax has engineered potent and selective serine protease inhibitors using a human Kunitz domain scaffold. Our most advanced drug candidate, ecallantide, was developed using this protein engineering platform. Examples of the discovery and development of ecallantide for the treatment of acute attacks of Hereditary Angioedema (HAE) will be presented.
Christopher TenHoor, Ph.D., Senior Vice President, Pharmacology and Preclinical Development, Dyax Corp.
10:30
Networking Refreshment Break
11:00
Hitting Intracellular as well as Extracellular Targets by Phenotypic Screening of Phylomer Libraries
Phylomers are a new class of peptide derived from genomic fragments of biodiverse archael and bacterial species. Phylomer peptides can exhibit superior functional hit-rates, when compared to randomly derived peptides, possibly due to an evolutionary selection for structure and stability. We have exploited these high hit rates to allow direct screening for particular phenotypes. The Cambridge Centre for Molecular Therapeutics has demonstrated an unprecedented hit rate of approximately 0.1% of unselected Phylomers, for specific blockade of AP1 dependent signaling pathways. Phylomer peptides were also identified via a direct Phenotypic screen for binding to live bacteria, which demonstrated potent antimicrobial activity against clinical isolates of multi-drug resistant microorganisms. We have recently obtained in vivo data from a pneumonia model, showing that these Phylomers can block lung colonization upon injection.
Paul Watt, Ph.D., Chief Scientific Officer, Phylogica Ltd, Australia
11:30
Case Study: The Molecular Basis for Avimer™ Protein Recognition
Avimer proteins are a class of multi-domain proteins designed and selected for specific binding and/or inhibitory properties. They are based on so-called “A domains” found in a number of human extracellular receptors. Linking multiple independent binding domains increases avidity and results in improved affinity and specificity compared with conventional single-epitope binding proteins. We have determined complex crystal structures of neutralizing anti-IL-6 Avimers bound to the pro-inflammatory cytokine IL-6 which demonstrate the molecular basis for Avimer recognition in this system.
Zhulun Wang, Ph.D., Scientific Director, Molecular Structure, Amgen, Inc.
12:00
Ubiquitin: An Ideal Scaffold
The Ubiquitin-based Affilin® platform is a novel approach in the field of alternative scaffold development. which has been validated in efficacy, safety and immunogenicity studies in animals. Ubiquitin-based binding Affilin® molecules offer the advantage of using standard animal models even for chronic treatments and predicting the immunogenicity of candidates using animals. A flexible multimerisation strategy creates binding molecules ranging from 8 kDa to more than 60 kDa supporting the modulation of pharmacokinetic parameters. In addition, Affilin® multimerisation dramatically affects affinity and specificity of binding molecules and is a powerful tool to develop novel biopharmaceuticals.
Arnd Steuernagel, Ph.D., Chief Scientific Officer, Scil Proteins, Germany
1:45
Working at the DNA Level: Development of a Novel Class of Human Therapeutics
Sangamo BioSciences, Inc. is focused on the research and development of a novel technology platform employing zinc finger DNA-binding proteins (ZFPs) for therapeutic regulation and modification of any disease-related gene. The most advanced ZFP Therapeutic™ development program is currently in Phase 2 clinical trials for the treatment of diabetic neuropathy and ALS. Sangamo also has a Phase 1 clinical trial underway for the treatment of HIV/AIDS. Other therapeutic development programs are focused on cancer, neuropathic pain, nerve regeneration, Parkinson's disease and monogenic diseases.
Edward Lanphier, President and CEO, Sangamo Biosciences, Inc.
2:15
Clinical Validation of Adnectins: Latest Data on CT-322
Adnectins offer various potential advantages compared to traditional biologics, including speed of discovery, ease of manufacturing, and the ability to create multi-functional targeted products. Our first Adnectin to enter clinical studies, CT-322, has demonstrated potent VEGFR-2 blocking activity in a Phase I study. With over 70 patients treated across multiple studies, CT-322 establishes significant clinical validation of the Adnectin class.
Eric Furfine Ph.D., Senior Vice President, Research and Preclinical Development, Adnexus, A Bristol-Myers Squibb R&D Company
2:45
Designed 3-helical Proteins for Molecular Imaging and Therapy
Clinical imaging and biodistribution data on Affibody molecules support further development. The second generation Affibody molecules display improved biophysical and biodistribution properties. They have also been combined with a novel albumin-binding domain to obtain a long in vivo half-life suitable for therapeutic application. A high affinity albumin-binding domain has been shown to be superior.
Lars Abrahmsen, Ph.D., Chief Scientific Officer, Affibody AB, Sweden
3:15
Networking Refreshment Break
Antibody-Derived Scaffolds: Emerging Preclinical Results
3:45
The Development of Shark-Derived, Single-Domain Binding Molecules as Human Therapeutics
Wyeth is working on the novel antigen-binding molecules found associated with immunoglobulin and some TCRs in sharks. These molecules bind antigen as small (~12 kDa), soluble, single-domains with high affinity, specificity and stability. This presentation will detail our progress in developing this platform for the generation of new human therapeutics.
Helen Dooley. Ph.D., Senior Research Scientist, Wyeth Research, United Kingdom
4:15
Shark Antibodies and Their Human Analogues as Potential Therapeutics
Shark antibodies (IgNARs) have been shown to possess an elongated CDR3 loop that is considered to be ideal for targeting cleft-type epitopes such as enzyme active sites and surface receptors which are otherwise inaccessible to conventional antibodies. Elucidation of the IgNAR structure revealed a striking similarity with the I-set class of molecules which includes cell adhesion molecules such as N-CAM. Based on the principles that have been identified in the shark antibody binders a humanized version of our shark antibody library has been constructed. This library of “i-bodies” will provide humanized binders with the features of the shark antibodies.
Mick Foley, Ph.D., Associate Professor, Department of Biochemistry, La Trobe University, Chief Scientific Officer, AdAlta, Australia
4:45
Accelerating scFv Antibody Fragments for Topical Applications into the Clinic
Due to their low molecular weight (26 kDa) and the resulting pharmacokinetic properties, single-chain antibody fragments qualify for local therapies and delivery routes that have not yet been explored for full-size antibodies and larger fragments thereof. Stable naturally occurring variable domain scaffolds allow to engineer scFvs with drug-like properties. ESBA105 is a humanized anti-TNF scFv, developed for the treatment of inflammatory ocular diseases as well as for osteoarthritis. This antibody fragment, upon administration to the ocular surface by eye drops, penetrates into all ocular compartments and reaches therapeutic concentrations in the aequeous and the retina. Preclinical efficacy with topical application of eye drops containing ESBA105 is shown in the monkey laser-injury model for choroid revascularization.
David Urech, Ph.D., Head of R&D, ESBATech, Switzerland
Panel Discussion
5:15
Accessing Target Diversity of Novel Scaffolds
- Which scaffolds are biased to which target classes?
- Targets inside cells
- Expanding target class accessibility of a given scaffold
Protein Engineering & Design
8:15
Chairperson's Remarks
Jonathan Davis, Ph.D., Principal Scientist, Protein Design, Adnexus, A Bristol-Myers Squibb R&D Company
Bi-Specifics and Multi-Specifics II
8:30
Multi-Specific Adnectins: Realizing the Promise of a Novel Class of Targeted Biologics
Adnectins offer numerous potential advantages compared to traditional targeted biologics, including speed of discovery, ease of manufacturing, and the ability to create multi-functional targeted products. We are currently advancing in our pipeline multi-specific Adnectin products where two different Adnectins are combined into a single molecule to specifically modulate two distinct targets. We will discuss methods to engineer and optimize multi-specific Adnectins, as well as present preclinical data demonstrating the clinical potential of these novel drugs.
Jonathan Davis, Ph.D., Principal Scientist, Protein Design, Adnexus, a Bristol-Myers Squibb R&D Company
8:55
Clinical Update on BiTE: A New Antibody Platform for Cancer Therapy
We have developed bispecific T cell engager (BiTE) as a novel antibody platform for effective treatment of cancer. BiTE antibodies targeting CD19 for treatment of B cell malignancies (blinatumomab), and targeting EpCAM for treatment of adenocarcinoma (MT110) are in clinical development. New BiTE antibodies at preclinical stage target CEA (CD66e, CEACAM5), CD33, MCSP, EGFR and Her-2/neu. Clinical proof-of-concept will be presented for blinatumomab. We will also demonstrate elimination of cancer stem cells by MT110, and of KRAS- and BRAF-mutated colorectal cancer cells by a BiTE antibody based on anti-EGFR antibody cetuximab (Erbitux).
Patrick Baeuerle, Ph.D., CSO and SVP, R&D, Micromet AG, Germany
9:20
Protein Engineering for Bispecificity and Manufacturability
This talk will cover protein engineering efforts focused on novel ways to produce bispecific protein therapeutics. Examples of proteins made using this molecular architecture will be discussed along with optimization of expression and stabilities.
Michael Wittekind, Ph.D., Executive Director, Protein Science – Amgen Washington, Amgen, Inc.
Featured Presentation
9:45
Two-in-One Antibody: The Story of Converting Herceptin to Also Bind VEGF with High Affinity
A variant of Herceptin was selected on the basis of its ability to also interact with vascular endothelial growth factor (VEGF) at the antigen-binding site. Crystallographic and mutagenesis studies revealed that distinct amino acids of this antibody engage HER2 and VEGF energetically, but there is extensive overlap between the antibody surface areas contacting the two antigens. An affinity-improved version of this Two-in-One antibody inhibits HER2- and VEGF-mediated cell proliferation and tumor progression in mouse models.
Germaine Fuh, Ph.D., Scientist, Antibody and Protein Engineering, Genentech, Inc.
10:10
Networking Refreshment Break and Exhibit/Poster Viewing
Engineering for Improved Properties: Stability, Half-Life, Pharmacokinetics and Safety
10:40
Half-life Extension and In Vivo Biological Activity of Peptide and Protein Therapeutics
We have designed novel constructs containing long unstructured tails of hydrophilic amino acids (rPEG) that increase half-life. rPEG constructs of glucagon, exenatide, IL-1ra, and hGH had in vivo efficacy, prolonged half-life, and lack of immunogenicity in mice, rats, dogs, and monkeys. The technology allows control of peptide or protein half-life from a few hours to at least 100 hours without loss of biological effect in vivo. Case studies of these projects including preclinical data to support a regulatory submission will be presented.
Jeffrey L. Cleland, Ph.D., CEO, Versartis, Inc.
11:05
PASylation: A Novel Technology for Extending the Plasma Half-life of Therapeutic Proteins
Chemical conjugation of small therapeutic proteins with poly-ethylene glycol (PEG) to extend their effective size beyond the threshold of kidney filtration is an established strategy to prolong their typically short circulation times to a clinically useful range. As an alternative we have developed sequences comprising the amino acids Pro, Ala, and Ser, which form a conformationally disordered biological polymer with large hydrodynamic volume and high solubility, are resistant against serum proteases, and permit efficient production of biochemically active fusion proteins without necessitating costly and laborious chemical modification steps.
Arne Skerra, Ph.D., Professor of Biological, Chemistry, Technische Universitaet Muenchen, Germany
11:30
Modulating the Pharmacokinetic Properties of Therapeutic Proteins via Fc Engineering
Abstract not available at time of print. Visit www.ibclifesciences.com/beyond for updates.
William Dall'Acqua, Ph.D., Director, R&D, MedImmune
11:55
Stability-Engineered IgG-like Bispecific Antibodies
Stability engineering of scFvs has been used as an enabling technology at Biogen Idec to generate tetravalent and bispecific IgG-like molecules. Data on both the stability engineering and preclinical efficacy for several of these molecules will be presented.
Brian R. Miller, Senior Scientist, Biogen Idec, Inc.
12:20
Networking Luncheon and Exhibit/Poster Viewing
1:30
CB 813, an Improved Second Generation FVIIa Variant
We have used structure-based rational design and molecular modeling to design an improved second generation variant of FVIIa (CB 813) that we are advancing towards clinical trials to manage acute bleeds in hemophilia patients that have developed anti-FVIII or anti-FIX antibodies (i.e., patients with inhibitors). CB 813 exhibits both improved binding to the co-factor Tissue Factor (TF) and enhanced catalytic efficiency for activation of the substrate, Factor X. Compared with recombinant, wild type human Factor VIIa (current therapy for patients with inhibitors), CB 813 displays 6-10 fold improved potency in three distinct models of acute bleeding.
Edwin L. Madison, Ph.D., Chief Scientific Officer, Catalyst Biosciences, Inc.
1:55
Optimizing the Pharmacology of Protein Therapeutics with Improved Performance
Ambrx is using it's ReCode™ and EuCode™ technologies to site specifically attach effector molecules to Fabs and full length antibodies. The efficacy of tumor targeted antibodies is enhanced by site specific conjugation of toxic moieties to them in a way that does not interfere with their binding modality. Ambrx is also exploring using antibody backbones to improve the performance of peptide therapeutics. Various case studies will be presented.
Stuart Bussell, Ph.D., Director, Process Sciences, Ambrx
New Frontiers in Protein Engineering
2:20
Chemokine Structural Biology and Implications for Novel Therapeutics
Antagonizing chemokine function has become a wide spread goal in the pharmaceutical industry. To aid such endeavors, we have been using structural and biochemical methods to understand the molecular details of chemokine-receptor interactions and function. In this presentation, structural details of how chemokines interact with chemokine receptors, glycosaminoglycans and viral chemokine binding proteins will be discussed. The results suggest several strategies for the development of novel therapies based on inhibition of chemokine function.
Tracy M. Handel, Ph.D., Professor, Skaggs School of Pharmacy and Pharmaceutical Sciences, UCSD
2:45
Products Derived from Non-human, 'Hypotopic' Proteins as A Safer Alternative to Human Proteins
Human-derived proteins and even fully human proteins can be immunogenic in humans and raise an immune response that neutralizes the native protein. In order to avoid this fundamental safety problem, we propose to create products from non-human-derived sequences that will not cross-react and not pose a safety issue. We have designed two types of 'hypotopic' proteins, each depleted of MHC-epitopes and non-immunogenic across species: rigidly structured microproteins, 30-60AA long and containing a high density of disulfides, to create target binding sites, and unstructured linkers that provide flexibility and half-life.
Willem 'Pim' Stemmer, Ph.D., CEO, Amunix, Inc.
3:10
Networking Refreshment Break and Exhibit/Poster Viewing
3:40
Engineering a Protein-Protein Interface Using a Computationally Designed Library
We have taken advantage of both computational modeling and high-throughput screening of protein libraries to evolve a novel binding interface between E6AP and Ubc12. First, using computer simulations we have identified a library of mutations that should be introduced to E6AP. High-throughput screening of this designed library led to the selection of an E6AP mutant that bound to its target with a Kd of 36 nM (>3,000 fold higher affinity than parent E6AP).
Gurkan Guntas, Ph.D., Postdoctoral Research Associate, Brian Kuhlman Lab, University of North Carolina at Chapel Hill
4:05
Interfering Peptides Targeting Extended Protein Interaction Surfaces
We use rational design in combination with in vivo and in vitro selection systems combining competitive and negative design aspects. Peptides specifically directed against the protein-protein interaction domain of transcription factors such as Jun, Fos, Myc and AF10 were generated and major energetic differences (≥5.6 kcal/mol) are observed between desired and non-desired interaction stabilities. In addition, we compiled a 'bZIP coiled-coil interaction prediction algorithm' (bCIPA) for the prediction of coiled coil-mediated protein-protein interaction of natural proteins as well as designed inhibitors. Cellular assays demonstrate inhibitory effects of our peptides. To improve serum half-life time, D-peptides have been exploited as well.
Katja Arndt, Ph.D., Principal Investigator, Freiburg Institute for Advanced Studies, School of Life Sciences, University of Freiburg, Germany
4:30
Computational Design of de novo Enzymes
For many chemical transformations, no natural enzyme exists. Arzeda's technology bridges the gap by creating these synthetic enzymes. Our recently developed computational enzyme design methodology, licensed from the University of Washington, is applicable to any chemical reaction. Starting from a description of the ideal catalytic machinery, the enzyme design methodology generates novel enzymes predicted to catalyze the reaction.
Eric Althoff, Ph.D., Post-Doctoral Fellow, David Baker Lab, University of Washington, Head of Chemistry, Arzeda
4:55
Quantitative Modulation of Fusion Protein Components
Evolution modulates the quantitative characteristics of protein interactions and often uses combinations of weak interactions to achieve specificity. We used quantitative optimization in designing fusion proteins that direct interferon-alpha or erythropoietin to a subset of receptor-bearing cells. The resulting proteins show enhanced cell-type specificity and thus should have reduced side effects.
Jeffrey Way, Ph.D., Senior Staff Scientist, Wyss Institute for Biologically Inspired Engineering, Harvard Institutes of Medicine